PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.176780.2
Common NameCsa_3G730800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 477aa    MW: 52243.6 Da    PI: 6.8638
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.176780.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.23.4e-33170226259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh 
  Cucsa.176780.2 170 NDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGTHNHA 226
                     7****************************************.***************7 PP

2WRKY105.43e-33319376259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      Dgy+WrKYGqK+vkg+++prsYY+Cts gCpv+k++er+a+d ++v++tYeg+Hnhe
  Cucsa.176780.2 319 PDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHE 376
                     6********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28156228IPR003657WRKY domain
PROSITE profilePS5081123.043164228IPR003657WRKY domain
SuperFamilySSF1182907.45E-25165228IPR003657WRKY domain
SMARTSM007745.8E-35169227IPR003657WRKY domain
PfamPF031063.8E-25170225IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-36303378IPR003657WRKY domain
SuperFamilySSF1182902.09E-28310378IPR003657WRKY domain
PROSITE profilePS5081137.114313378IPR003657WRKY domain
SMARTSM007741.9E-37318377IPR003657WRKY domain
PfamPF031062.9E-25320376IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MSNINQTINT LAGGSSDNRT NNFAMEVPKF KSFQPPPFPM SPSSYLSSFS SGLSPTEILN  60
SPLLFSFGVF PSPTTGALNL RNDYEEVDQQ EMKGDVKNYS VSAYNPQTGS SVSSYFQSSS  120
SNLTLLNPSG LSCDESGAKS EFVNTEMAAA ESKQNSQLAI YNREQQKSEN DGYNWRKYGQ  180
KQVKGSENPR SYYKCTFPSC PTKKKVERSL DGQITEIVYK GTHNHAKPQP TRRSSNSGVY  240
DPSAAETGVL QEDCSVSVGE EEFEPNSPFS NSIEDNENEP EAKRWKGENE NEGYCGGGSR  300
TVKEPRIVVQ TTSEIDILPD GYRWRKYGQK VVKGNPNPRS YYKCTSLGCP VRKHIERAAN  360
DMRAVITTYE GKHNHEVPAA RGSGGGGYNT INRPIPTNIP MALRPLSSVT SHSFPANFPA  420
AFRPGNLGMS ETGTQASSFP FQTSHGVLPS FQVSGFGSAA KEEVRDDTYF INSFLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36170379878Probable WRKY transcription factor 4
2lex_A2e-36170379878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840220.0GU984022.1 Cucumis sativus WRKY protein (WRKY23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001292676.10.0probable WRKY transcription factor 26
SwissprotQ8S8P51e-115WRK33_ARATH; Probable WRKY transcription factor 33
TrEMBLA0A0A0LF620.0A0A0A0LF62_CUCSA; Uncharacterized protein
STRINGPOPTR_0016s13600.11e-132(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-108WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]